Courses (2023-24)

An introduction to climate on Earth. How Earth's climate has changed in the past and its evolving response to the rapid increase in carbon dioxide and methane happening today. Model projections of future climate and associated risks. Development of climate policies in face of uncertainty in these projections and risks. Enrollment is limited. Satisfies the menu requirement of the Caltech core curriculum. Juniors and Seniors who have satisfied their menu course requirement should enroll in ESE 101.

To paraphrase a Caltech engineering colleague: "In terms of Earth and the Environment, our species had been nothing more than the hood ornament on a really interesting car. We should be studying what's under the hood, the microbial world, if we want to understand the engine". We will spend the term examining striking examples of microbes and microbial activities in the environment. First-year (undergraduates) only; limited enrollment.

Approval of research supervisor required prior to registration. Independent research on current environmental problems; laboratory or field work is required. A written report is required for each term of registration. Graded pass/fail.

Two terms of ESE 90 are to be completed during the junior and/or senior year of study. At the end of the third term, students enrolled in ESE 91 will present a thesis of approximately 20 pages (excluding figures and references) to the mentor and the ESE Option Representative. The thesis must be approved by both the research mentor and the ESE faculty. An oral thesis defense will be arranged by the ESE Option Representative in the third term for all enrollees. All prior terms of ESE 90 will be taken on a pass/fail basis, but the third term of ESE 91 will carry a letter grade.

Special courses of readings or laboratory instruction. Graded pass/fail.

Introduction to the fundamental processes governing atmospheric circulations and climate. Starting from an overview of the observed state of the atmosphere and its variation over the past, the course discusses Earth's radiative energy balance including the greenhouse effect, Earth's orbit around the Sun and climatic effects of its variations, and the role of atmospheric circulations in maintaining the energy, angular momentum, and water balances, which determine the distributions of temperatures, winds, and precipitation. The focus throughout is on order-of-magnitude physics that is applicable to climates generally, including those of Earth's past and future and of other planets.

This course will provide a basic introduction to physical, chemical, and biological properties of Earth's ocean. The course is divided into three parts that address various aspects of the marine carbon cycle, including carbon and tracer transport by the ocean circulation, carbonate chemistry, and fixation/respiration of carbon by biological processes. These parts are tied to three key questions that highlight the ocean's role in the global climate system: What processes contribute to changes in global and local sea level? How and where does the ocean exchange carbon dioxide with the atmosphere? Why is a warming climate associated with ocean acidification and what are the biological consequences? The course will also provide perspectives on how we observe and model the ocean and how these tools are used in climate predictions.

Provide a basic introduction to Global Biogeochemical cycles, with a focus on drivers of the global biosphere. Topics to be covered include fundamentals of photosynthesis and its quantitative formulation, impact of nutrients, microbial processes underlying weathering, decomposition, and carbon remineralization, box modeling, hydrological cycle, land surface energy balance and basics of land surface modeling, ecosystem processes and the human footprint. Scripting (Matlab) knowledge useful for homework sets.

Discussion of current research by ESE graduate students, faculty, and staff.

The theory of evolution is arguably biology’s greatest idea and serves as the overarching framework for thinking about the diversity and relationships between organisms. This course will present a broad picture of evolution starting with discussions of the insights of the great naturalists, the study of the genetic basis of variation, and an introduction to the key driving forces of evolution. Following these foundations, we will then focus on a number of case studies including the following: evolution of oxygenic photosynthesis, origin of eukaryotes, multicellularity, influence of symbiosis, the emergence of life from the water (i.e. fins to limbs), the return of life to the water (i.e. limbs to fins), diversity following major extinction events, the discovery of Archaea, insights into evolution that have emerged from sequence analysis, and finally human evolution and the impact of humans on evolution (including examples such as antibiotic resistance). A specific focus for considering these issues will be the island biogeography of the Galapagos. Given in alternate years; offered 2023-24.

Exploratory research for first-year graduate students and qualified undergraduates. Graded pass/fail.

Required attendance by first year graduate students at the weekly ESE seminar, Wednesdays 4pm. Graded pass/fail.

Examines the Earth's resources including fresh water, nitrogen, carbon and other biogeochemical cycles that impose planetary constraints on engineering; systems approaches to sustainable development goals; fossil fuel formation, chemical composition, production and use; engineering challenges and opportunities in decarbonizing energy, transportation and industry; global flows of critical elements used in zero-carbon energy systems; food-water-energy nexus; analysis of regional and local systems to model effects of human activities on air, water and soil.

This course provides a survey from the perspective of economics of public policy issues regarding the management of natural resources and the protection of environmental quality. The course covers both conceptual topics and recent and current applications. Included are principles of environmental and resource economics, management of nonrenewable and renewable resources, and environmental policy with the focus on air pollution problems, both local problems (smog) and global problems (climate change).

This course is an introduction to the fluid dynamics of the atmosphere and ocean, with an emphasis on dynamical concepts that explain the large-scale circulation of both fluids. Starting from the equations of motion, we will develop an understanding of geostrophic and hydrostatic balance, inertia-gravity waves, geostrophic adjustment, potential vorticity, quasi-geostrophic dynamics, Rossby waves, baroclinic instability, and Ekman layers.

This course gives an in-depth discussion of the fluid dynamics of the world ocean. Building on the concepts developed in ESE 130, this course explores the vertical structure of the wind-driven gyre circulation, thermocline theory, the dynamics of the Southern Ocean, eddies and eddy parameterizations, geostrophic turbulence, submesoscale dynamics, the circulation of the deep ocean, tides, internal waves, and turbulent mixing. Offered 2023-24.

Introduction to the global-scale fluid dynamics of atmospheres, beginning with a phenomenological overview of observed circulations on Earth and other planets and leading to currently unsolved problems. Topics include constraints on atmospheric circulations and zonal winds from angular momentum balance; Rossby wave generation, propagation, and dissipation and their roles in the maintenance of global circulations; moist convection and its coupling to waves and circulations; Hadley circulations and tropical-extratropical interactions; energy cycle and thermodynamic efficiency of atmospheric circulations. The course focuses on Earth's atmosphere but explores a continuum of possible planetary circulations and relationships among them as parameters such as the planetary rotation rate chance.

A lecture or discussion course on current research in atmosphere and ocean dynamics. Topics covered vary from year to year and may include global circulations of planetary atmospheres, geostrophic turbulence, atmospheric convection and cloud dynamics, wave dynamics and large-scale circulations in the tropics, marine physical-biogeochemical interactions, dynamics of the El Nino Southern Oscillation, and global warming.

An introduction to the use of stable isotopes in biogeochemistry, intended to give interested students the necessary background to understand applications in a variety of fields, from modern carbon cycling to microbial ecology to records of Ancient Earth. Topics include the principles of isotope distribution in reaction networks; isotope effects in enzyme-mediated reactions, and in metabolism and biosynthesis; characteristic fractionations accompanying carbon, nitrogen, and sulfur cycling; and applications of stable isotopes in the biogeosciences. Offered 2023-24.

Inorganic chemistry of natural waters with an emphasis on equilibrium solutions to problems in rivers, lakes, and the ocean. Topics will include, acid-base chemistry, precipitation, complexation, redox reactions, and surface chemistry. Examples will largely be drawn from geochemistry and geobiology. Selected topics in kinetics will be covered based on interest and time.

This class will provide an overview of how we study the Earth's climate system using satellite remote sensing; a series of core lectures and guest lectures will be jointly taught by Caltech faculty and JPL scientists. Topics that will be covered include Introduction to the climate system; introduction to radiative transfer, retrieval methods and data assimilation; Earth's energy balance; atmospheric physics and composition; ocean dynamics and ice physics; monitoring the carbon cycle from space.

This course covers physical, mathematical and simulation aspects of single and two-phase flow and transport through porous media. Conservation equations for multiphase, multicomponent flow. Modeling of fluid mechanical instabilities such as viscous fingering, gravity fingering and gravity-driven convection. Coupling fluid flow with chemical reactions. Coupling single phase flow with poromechanics. Numerical methods for elliptic equations: finite volume methods, two-point flux approximations, finite difference, spectral method. Numerical methods for hyperbolic equations: high-order explicit methods, implicit method. Applications in hydrology, geological CO2 sequestration and induced seismicity, among others will be demonstrated.

Ecosystems are defined by dynamical interactions between groups of organisms, the communities they constitute, and the physical and chemical conditions and processes occurring in the environment. These dynamics are complex and multiscale across both length and time. This course will explore quantitative approaches that observe, measure, model, and monitor ecosystems and the services that they provide society-and the emerging opportunities that could employ these approaches to improve and strengthen global sustainability when it comes to our own ecology. This course will feature lectures each week from different members of the Caltech faculty working on ecological problems from different angles in order to illustrate how fresh insights can emerge by drawing on diverse ways-of-knowing. Given in alternate years; not offered 2022-23.

A broad survey of the formation, evolution, and present-day properties of planetary atmospheres, drawing examples from both the solar system and extrasolar planet literature. We will cover topics including energy balance, radiative transfer, chemistry, cloud formation, dynamics, and escape. The goal of this class is to provide an overview of key concepts relevant to planetary atmospheres that can serve as a foundation for future coursework or research in this area.

An introduction into methods to quantify trace gases as well as vegetation properties remotely (from space, air-borne or ground-based). This course will provide the basic concepts of remote sensing, using hands-on examples to be solved in class and as problem-sets. Topics covered include Absorption spectroscopy, measurement and modeling techniques, optimal estimation theory and error characterization, applications in global studies of biogeochemical cycles and air pollution/quality. This course is complementary to EE/Ae 157 ab and Ge/EE/ESE 157 c with stronger emphasis on applications for the atmosphere and biosphere. Students will work with real and synthetic remote sensing data (basic knowledge of a scripting language is advantageous, most of the examples will be in Julia).

Analysis of electromagnetic radiation at visible, infrared, and radio wavelengths for interpretation of the physical and chemical characteristics of the surfaces of Earth and other planets. Topics: interaction of light with materials, spectroscopy of minerals and vegetation, atmospheric removal, image analysis, classification, and multi-temporal studies. This course does not require but is complementary to EE 157 ab with emphasis on applications for geological and environmental problems, using data acquired from airborne and orbiting remote sensing platforms. Students will work with digital remote sensing datasets in the laboratory and there will be one field trip.

Fundamentals of aerosol physics and chemistry; aerodynamics and diffusion of aerosol particles; condensation and evaporation; thermodynamics of particulate systems; nucleation; coagulation; particle size distributions; optics of small particles. Offered 2023-24.

A course on growth and functions in the prokaryotic cell. Topics covered: growth, transport of small molecules, protein excretion, membrane bioenergetics, energy metabolism, motility, chemotaxis, global regulators, and metabolic integration.

A detailed course about chemical transformation in Earth's atmosphere. Kinetics, spectroscopy, and thermodynamics of gas-phase chemistry of the stratosphere and troposphere; sources, sinks, and lifetimes of trace atmospheric species; stratospheric ozone chemistry; oxidation mechanisms in the troposphere; aerosol chemistry.

Microbes, the most diverse and abundant organisms on Earth, are critical to the daily functioning of humans as well as the life-sustaining biogeochemical cycles. This course provides an in-depth exploration of the fascinating world of environmental microbiology and genomics, with a special emphasis on computational approaches for systems-level analysis of microbial communities and their interactions. The course will delve into the diverse roles of microorganisms in environmental processes ranging from nutrient and biogeochemical cycling to predicting the impacts of climate change. It will introduce students to a wide range of computational tools and techniques used in the analysis of microbial genomic data. Topics covered include: microbial community structure and functioning; interactions among microbes and their environment; and the influence of the environment in shaping and driving microbial evolution. Through a combination of lectures, discussions, and hands-on computational exercises, students will gain skills in analyzing, interpreting and visualizing large scale community metagenomic (DNA) and metatranscriptomic (RNA) data from environmental ecosystems. Students will also explore how these computational approaches can be applied to address real-world environmental challenges, broaden understanding of the genetic and metabolic diversity of the microorganisms to better manage ecosystem function, the value of this biodiversity for adaptation to natural and anthropogenic perturbations. Prior experience in Environmental microbiology, shell scripting and python while encouraged is not required.

Course on contemporary topics in environmental science and engineering. Topics covered vary from year to year, depending on the interests of the students and staff.

This seminar course will explore and discuss the unique intersection of environmental racism, environmental justice, and academia. Course material will primarily feature readings and videos on a case study-like basis and focus on bringing conversations typically had in humanities, social sciences and activism to the bio and geosciences. Topics will center around two primary approaches: an "outward-facing" component that looks at environmental racism through the lens of various activisms, and an "inward-facing" component addressing the biases/malpractices broadly employed in the biological and geosciences, as well as the apparent moral dilemmas of decisions involving multiple stakeholders. Out of class work will largely be based on assigned readings, some multimedia presentations, and occasional writings and thought exercises. This course is taught concurrently with Hum 61 and can only be taken once, as Ge/ESE/Bi 248 or Hum 61.

In consultation with a faculty advisor and the Caltech Center for Teaching, Learning, and Outreach, students may obtain credit for engaging in volunteer efforts to promote public understanding of science; to mentor and tutor young people and underserved populations; or to otherwise contribute to the diversity, equity, and inclusiveness of the scientific enterprise. Students may petition their option representative (graduate students) or academic advisor (undergraduate students) if they seek credits beyond the 12-unit limit.

Thesis research for graduate students after passing the qualifying exam. Graded pass/fail.